Raw data download

The "Accession Number" in the table below will direct users to the original NCBI/EBI data repositories, where they can access all meta information and data about the raw dataset. Accession numbers starting with "PRJEB" should be downloaded from the EBI-ENA repository, while those starting with "SRP" should be downloaded from the NCBI-SRA repository.

The "Raw Data Download Link" in the table below, we also provide a link to download the raw data (fast5 files) directly.

* If clicking the download link does not work, place your mouse over the link, right-click, select "Copy link address," and then paste the link into a new browser window to download.

Dataset	Publish Date	Accession Number	Species	Type	Sample	Raw Data Download Link *
ont_ployA_standard	2018-09	PRJEB28423	Synthetic	RNA	10xpolyA	10xpolyA.tar.gz
					15xpolyA	15xpolyA.tar.gz
					30xpolyA	30xpolyA.tar.gz
					60xpolyA	60xpolyA.tar.gz
					80xpolyA	80xpolyA.tar.gz
					100xpolyA	100xpolyA.tar.gz
eGFP_polyA_DNA	2019-06	PRJEB31806	Synthetic	cDNA	dna_rep1_sqklsk108_flipflop	dna_rep1_sqklsk108_flipflop.tar.gz
					dna_rep2_sqklsk109_flipflop	dna_rep2_sqklsk109_flipflop.tar.gz
eGFP_polyA_RNA	2019-06	PRJEB31806	Synthetic	RNA	rna_rep1_sqkrna001_plus_rt	rna_rep1_sqkrna001_plus_rt.tar.gz
					rna_rep2_sqkrna001_plus_rt	rna_rep2_sqkrna001_plus_rt.tar.gz
					rna_rep3_sqkrna002_minus_rt	rna_rep3_sqkrna002_minus_rt.tar.gz
lambda_phage	2021-03	PRJNA926802	lambda phage	DNA	VER5940	single_fast5_lambdaphage.tar.1
NA12878	2019-06	PRJEB23027	Homo sapiens	DNA	FAB42828	FAB42828-288548394_Multi_Fast5.tar   &   Raw fast5 page
					FAF04090	FAF04090-3842965088_Multi_Fast5.tar  &   Raw fast5 page
					FAF09968	FAF09968-3439856925_Multi_Fast5.tar  &  Raw fast5 page
curlcake	2019-07	PRJNA511582	Synthetic	RNA	m6A-mod-rep1	RNAAB090763.fast5.tar.gz.3
					m6A-mod-rep2	RNA081120182.fast5.tar.gz.2
					non-mod-rep1	RNAAB089716.fast5.tar.gz.4
					non-mod-rep2	RNA081120181.fast5.tar.gz.2
scBY4741_m5C	2021-06	PRJNA563591	Synthetic	RNA	m5C_modified	RNA010220191_m5C_fast5.tar.gz.1
scBY4741_hm5C	2021-06	PRJNA548268	Synthetic	RNA	hm5C_modified	RNA080420191_5hmC_fast5.tar.gz.1
scBY4741_pU	2021-02	PRJNA549001	Synthetic	RNA	pU_modified	pU.tar.4
hct116	2021-04	PRJEB44348	Homo sapiens	RNA	HCT-WT-rep1	SGNex_Hct116_directRNA_replicate3_run1.tar.gz   &   AWS
					HCT-WT-rep2	SGNex_Hct116_directRNA_replicate3_run4.gz   &   AWS
					HCT-WT-rep3	SGNex_Hct116_directRNA_replicate4_run3.tar.gz   &   AWS
hek293t_wt	2021-01	PRJEB40872	Homo sapiens	RNA	HEK293T-WT-rep1	HEK293T-WT-rep1.tar.gz
					HEK293T-WT-rep2	HEK293T-WT-rep2.tar.gz
					HEK293T-WT-rep3	HEK293T-WT-rep3.tar.gz
hek293t_ko	2021-01	PRJEB40872	Homo sapiens	RNA	HEK293T-Mettl3-KO-rep1	HEK293T-Mettl3-KO-rep1.tar.gz
					HEK293T-Mettl3-KO-rep2	HEK293T-Mettl3-KO-rep2.tar.gz
					HEK293T-Mettl3-KO-rep3	HEK293T-Mettl3-KO-rep3.tar.gz
mESCs_eligos	2020-10	PRJNA497103 SRP166020	Mus musculus	RNA	mESCs_Mettl3_WT	mESCs_Mettl3_WT_fast5.tar.gz.1
					mESCs_Mettl3_KO	mESCs_Mettl3_KO-ref_fast5.tar.gz.1
ecoli_eligos	2020-08	PRJNA497103 SRP166020	Escherichia coli	RNA	IVT_Inosine	IVT_Inosine_fast5.tar.gz.1
					IVT_m5C	IVT_m5C_fast5.tar.gz.1
					IVT_m6A	IVT_m6A_fast5.tar.gz.1
					IVT_normalA	IVT_normalA_fast5.tar.gz.1
					IVT_normalC	IVT_normalC_fast5.tar.gz.1
dinopore_ivt	2023-01	SRP363295	Synthetic	RNA	gBlock_pureI	20200322_gBlock2_pureI.fast5.tar.gz.1
					gBlock_G	20200322_gBlock2_G.fast5.tar.gz.1
dinopore_xenopus	2022-04	SRP363295	Xenopus lavies	RNA	rep3_stage1_20200812	20200812_xenopus_rep3_stage1_withRT.tar.gz
					rep3_stage1_20201005	20201005_xenopus_rep3_stage1_withRT.tar.gz
					rep3_stage9_20200812	20200812_xenopus_rep3_stage9_withRT.tar.gz.2
					rep3_stage9_20201008	20201008_xenopus_rep3_stage9_withRT.tar.gz.2